Number of seats in Government Medical College
| # | Super Speciality Courses | Trivandrum | Alappuzha | Kottayam | Thrissur | Kozhikkode | Kannur | Total |
| 1 | M.Ch. Paediatric Surgery | 6 | 0 | 1 | 0 | 4 | 0 | 11 |
| 2 | M.Ch. Plastic & Reconstructive Surgery | 2 | 0 | 2 | 0 | 2 | 0 | 6 |
| 3 | M.Ch. Genito Urinary Surgery | 6 | 2 | 3 | 0 | 4 | 0 | 15 |
| 4 | M.Ch. CVTS | 4 | 0 | 4 | 0 | 2 | 0 | 10 |
| 5 | M.Ch. Neuro Surgery | 6 | 2 | 4 | 3 | 2 | 0 | 17 |
| 6 | M.Ch. Gastro Enterology Surgery | 2 | 0 | 0 | 0 | 0 | 0 | 2 |
| 7 | D.M. Cardiology | 8 | 3 | 4 | 2 | 6 | 1 | 24 |
| 8 | D.M. Medical Gastro Enterology | 6 | 0 | 3 | 0 | 4 | 0 | 13 |
| 9 | D.M. Neurology | 5 | 2 | 1 | 0 | 2 | 0 | 10 |
| 10 | D.M. Nephrology | 3 | 2 | 3 | 0 | 2 | 0 | 10 |
| 11 | D.M. Pulmonary Medicine | 0 | 0 | 0 | 0 | 1 | 0 | 1 |
| 12 | D.M. Endocrinology | 2 | 0 | 0 | 0 | 0 | 0 | 2 |
| 13 | D.M. Paediatric Neurology | 2 | 0 | 0 | 0 | 0 | 0 | 2 |
| 14 | D.M. Neonatology | 4 | 0 | 0 | 0 | 0 | 0 | 4 |
| 15 | M.Ch. Reproductive Medicine & Surgery | 2 | 0 | 0 | 0 | 0 | 0 | 2 |
| 16 | D.M. Infectious Diseases | 0 | 0 | 2 | 0 | 0 | 0 | 2 |
| Total | 58 | 11 | 27 | 5 | 29 | 1 | 131 |